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Perl/CGI script with Apache2

While it is probably better to run a PSGI based server, than a CGI-based server it can be also very useful to learn how to write CGI scripts. Especially if you need to maintain one.
This article will help you set up an Apache web server to run CGI scripts.

Background start Linux, install Apache2

We will configure a Digital Ocean droplet, using Ubuntu 13.10 64bit.
After creating the Droplet, ssh to the server and update the installed packaged to the latest and then reboot the machine.
(The droplet I was using to implement this had an IP address of )
ssh root@
# aptitude update
# aptitude safe-upgrade
Once the machine restarted ssh to it again and and install the MPM preforking version of Apache2.
ssh root@
# aptitude install apache2-mpm-prefork
You can check if apache is running by executing ps axuw:
# ps axuw | grep apache
The output on my instance looked like this:
root      1961  0.0  0.5  71284  2608 ?        Ss   14:16   0:00 /usr/sbin/apache2 -k start
www-data  1964  0.0  0.4 360448  2220 ?        Sl   14:16   0:00 /usr/sbin/apache2 -k start
www-data  1965  0.0  0.4 360448  2220 ?        Sl   14:16   0:00 /usr/sbin/apache2 -k start
root      2091  0.0  0.1   9452   908 pts/0    S+   14:16   0:00 grep --color=auto apache
Now you can browse to the web-site by pointing your browser to the IP address of the machine. In my case it was Please note, some browsers will not work properly if you don't put the http:// in front of the IP address.
If everything works fine you will see something like this in the browser:
Apache2 default page on Ubuntu 13.10
This is the content of the /var/www/index.html file on the server.
You can edit that file, and reload the page in the browser.

Creating the first CGI script in Perl

Create the /var/cgi-bin directory
(Please note, we don't create this inside the /var/www directory on purpose. This way, even if misconfigured the server it won't serve the source code of the script. Which is a good thing.)
mkdir /var/cgi-bin
and create a file called /var/cgi-bin/echo.pl with the following content:

use strict;
use warnings;
print qq(Content-type: text/plain\n\n);
print "hi\n";

Make the file executable by

chmod +x /var/cgi-bin/echo.pl

and run it on the command line:

# /var/cgi-bin/echo.pl

It should print:

Content-type: text/plain

This is your first CGI-script in Perl.
Now we need to configure the Apache web server to server it properly.

Configure Apache to serve CGI files

Open the configuration file of Apache /etc/apache2/sites-enabled/000-default.conf
It has the following in it with a bunch of comments between the lines:
 <VirtualHost *:80 >
 ServerAdmin webmaster@localhost
        DocumentRoot /var/www

        ErrorLog ${APACHE_LOG_DIR}/error.log
        CustomLog ${APACHE_LOG_DIR}/access.log combined

  < /VirtualHost  >

Add the following lines after the DocumentRoot line:
      ScriptAlias /cgi-bin/ /var/cgi-bin/
           <Directory "/var/cgi-bin"  >
                 AllowOverride None
                 Options +ExecCGI -MultiViews +SymLinksIfOwnerMatch
                 Require all granted
          </Directory >
Now you should have: 

 <VirtualHost *:80 >
        ServerAdmin webmaster@localhost
        DocumentRoot /var/www

         ScriptAlias /cgi-bin/ /var/cgi-bin/

                 AllowOverride None
                 Options +ExecCGI -MultiViews +SymLinksIfOwnerMatch
                 Require all granted

        ErrorLog ${APACHE_LOG_DIR}/error.log
        CustomLog ${APACHE_LOG_DIR}/access.log combined

  </VirtualHost >
By default this Apache instance does not have the CGI module enabled. This we can see by noticing that the mods-enabled directory does not have any of the cgi files that are available in the mods-available directory:

# ls -l /etc/apache2/mods-enabled/ | grep cgi
# ls -l /etc/apache2/mods-available/ | grep cgi
-rw-r--r-- 1 root root   115 Jul 20  2013 cgid.conf
-rw-r--r-- 1 root root    60 Jul 20  2013 cgid.load
-rw-r--r-- 1 root root    58 Jul 20  2013 cgi.load
-rw-r--r-- 1 root root    89 Jul 20  2013 proxy_fcgi.load
-rw-r--r-- 1 root root    89 Jul 20  2013 proxy_scgi.load

We create symbolic links from the mods-enabled to the mods-available directory for the two cgid.* files, and then check again if the symbolic links were created properly by running ls -l again:

# ln -s /etc/apache2/mods-available/cgid.load /etc/apache2/mods-enabled/
# ln -s /etc/apache2/mods-available/cgid.conf /etc/apache2/mods-enabled/

# ls -l /etc/apache2/mods-enabled/ | grep cgi
lrwxrwxrwx 1 root root 37 Mar 19 14:39 cgid.conf -> /etc/apache2/mods-available/cgid.conf
lrwxrwxrwx 1 root root 37 Mar 19 14:39 cgid.load -> /etc/apache2/mods-available/cgid.load

At this point we can reload the Apache web server by the following command:

# service apache2 reload

This will tell Apache to read the configuration files again.
Then we can brows to (after replacing the IP address by yours) and you will see it shows the word "hi".
Congratulations, your first CGI script is running.

Dynamic results

This simple CGI script will show exactly the same content no matter who access it and when. Let's make a little change to the script so that we can see it is really generated dynamically.

use strict;
use warnings;
print qq(Content-type: text/plain\n\n);
print scalar localtime;

After changing the script if you access the page now it will display the current time on the server. If you reload the page, it will show the new current time.

Trouble shooting

If when you access the URL you see the content of the script instead of the word "hi" then you probably put the cgi-bin directory inside the /var/www and/or probably forgot to create the symbolic links for the cgid.* files. Move the cgi-bin directory outside the /var/www, update the configuration files, set up the symbolic links, and reload the server.

500 Internal Server Error

If you get an 500 Internal Server Error look at the error log in /var/log/apache2/error.log

[Wed Mar 19 15:19:15.740781 2014] [cgid:error] [pid 3493:tid 139896478103424] (8)Exec format error: AH01241: exec of '/var/cgi-bin/echo.pl' failed
[Wed Mar 19 15:19:15.741057 2014] [cgid:error] [pid 3413:tid 139896186423040] [client] End of script output before headers: echo.pl

This can happen if the script does not start with a sh-bang line pointing to a correctly installed perl. The first line of the file should be

[Wed Mar 19 15:24:33.504988 2014] [cgid:error] [pid 3781:tid 139896478103424] (2)No such file or directory: AH01241: exec of '/var/cgi-bin/echo.pl' failed
[Wed Mar 19 15:24:33.505429 2014] [cgid:error] [pid 3412:tid 139896261957376] [client] End of script output before headers: echo.pl

This probably indicates that the file is in DOS format. This can happen if you have ftp-ed the file from a Windows machine in binary mode. (You should not use ftp anyway.) You can fix this by running

dos2unix /var/cgi-bin/echo.pl
[Wed Mar 19 15:40:31.179155 2014] [cgid:error] [pid 4796:tid 140208841959296] (13)Permission denied: AH01241: exec of '/var/cgi-bin/echo.pl' failed
[Wed Mar 19 15:40:31.179515 2014] [cgid:error] [pid 4702:tid 140208670504704] [client] End of script output before headers: echo.pl

The above lines in the error.log, probably indicated that the script does not have the Unix executable bit.

chmod +x /var/cgi-bin/echo.pl
Wed Mar 19 16:02:20.239624 2014] [cgid:error] [pid 4703:tid 140208594970368] [client] malformed header from script 'echo.pl': Bad header: hi

This will be received if there is an output before the the Content-type. For example if you have written the two print-lines in reversed order like this:

use strict;
use warnings;
print "hi\n";
print qq(Content-type: text/plain\n\n);

[Wed Mar 19 16:08:00.342999 2014] [cgid:error] [pid 4703:tid 140208536221440] [client] End of script output before headers: echo.pl

This probably means that the script died before it managed to print the Content-type. The error.log, probably contains the exception that was not caught just before the above line.
You can also turn of the buffering of STDOUT by setting $| to a true value.

$|  = 1;
I am not sure, but I think Premature end of script headers is the same as End of script output before headers.

503 Service Unavailable

After I created the symbolic links to the cgid.* files and reloaded the Apache server, I got 503 Service Unavailable in the browser and the following line in the log file:
[Wed Mar 19 15:30:22.515457 2014] [cgid:error] [pid 3927:tid 140206699169536] (22)Invalid argument: [client] AH01257: unable to connect to cgi daemon after multiple tries: /var/cgi-bin/echo.pl
I am not sure why did this happen, but it after restarting the apache server it started to work properly:
# service apache2 restart
In most of the situations a reload should be enough, but maybe not when a module is enabled/disabled.

404 Not Found

If you get a 404 Not Found error in the browser and
[Wed Mar 19 15:35:13.487333 2014] [cgid:error] [pid 4194:tid 139911599433472] [client] AH01264: script not found or unable to stat: /usr/lib/cgi-bin/echo.pl
in the error log, then maybe the ScriptAlias line is missing, or not pointing to the proper directory.

403 Forbidden

If you get a 403 Forbidden error, the probably the Directory directive was not correctly configure or does not point to the correct path.


That's it. Hopefully, you have your first CGI script in Perl running.


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